I got it working. Seems like media encoder won't recognize the json-file if its only in the project-window. Although, if I use it as a layer anywhere in the project everything suddenly works. No need to re-adress any expressions or anything. Weird, but working. ps. Thank you Mylenium for your answer. I got a whole automation-script going and the client needs their files as h264 so excluding media encoder ins't really an option. Unfortunately. Unless you have a great, not too mind bending, render mending, top notch, ultimate combo solution.
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