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I was reading some stuff on Calathea plants in a pdf document for my research, and i highlighted main points is there any way to extract the highlighted stuff in that document.
If you can highlight the text, you should be able to select that text and copy that text. Can't you do that?
Did you enable the option to copy the selected text into the highlights?
If so, then you can use the Create Comments Summary command (via the Print dialog, for example) to do it.
If not it's still possible, but will require using a script.