Thanks for posting this. In a simple test, I'm not experiencing any problem with the Center Anchor Point In Layer Content command on a shape layer.
Does the problem only occur for you on shape layers, or is it on any layer? For example a solid with a mask on it.
Could you please try starting After Effects in Safe Mode? Go to Preferences > Startup & Repair, and click on the Start in Safe Mode button. Then restart After Effects and test the problem. (The next time you restar