I've attemped to set the size of my swf manually, but it zooms the entire connect window in so much I can only see the top left corner. Any suggestions?
Is your SWF AS2 or AS3?
Also, did you reference the document on creating SWF's for use in Connect? You can find the document here, http://www.adobe.com/devnet/adobeconnect.html, called the Collaboration Builder SDK.