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I have a book file that includes 5 documents with cross-references. I can set up the cross references in each individual file without issue, but once I try to export the complete book to PDF, I get an error message that I have invalid cross references.
Sure enough, when I go back into an individual file, I'll have to re-link some of the cross references, only to have them break all over again upon the next export attempt. I can't figure out what's going wrong, there doesn't appear to be much consistency in which references break each time either. Any advice would be greatly appreciated.
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Maybe your files are corrupted?
Try reseting preferences - and/or IDMLing - export each INDD file as IDML, open, save with a new name - do not overwrite your original INDD file - unless you have a backup and doing this on a copy of your files.