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This has happened several times. Adobe releases a major update (like it did recently with 16.0). After doing the update, all of my custom scripts disappear from my scripts panel, and I have to reload them or recreate them. It seems like the installer could check for custom scripts so they don't get overwritten.
This happens with the scripts in Adobe InDesign/Scripts/Scripts Panel as well as those in Adobe InDesign/Scripts/Startup scripts. Scripts in User/Library/Preferences/InDesign are copied over.
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Totaly agree, it should copy them over from older versions. That is why I uncheck 'remove older versions' when updating, copy them over and then later remove the older version.
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Where are you saving your scripts? Mine are all saved in the User folder, and they copied over with the update.
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This happens with the scripts in Adobe InDesign/Scripts/Scripts Panel as well as those in Adobe InDesign/Scripts/Startup scripts. Scripts in User/Library/Preferences/InDesign are copied over.