Now my Composition (full page navigation) will not allow the sub page links to work.
If the navigation would be over the first 1/4 of the page any links on that section will not work.
Only way I can get it to work is to switch it from stacked to lightshow.
Ok, when I do show in lightbox mode in editing this is when it breaks the site. But when I check if off the Composition is now in a layer below everything on the page.
Yes it is. The Muse team is aware of this. We only can wait for the next bugfix release …