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On my MacBook Pro (2023, Sonoma 14.6.1, Apple M2 Max) all .nef files will open in PS and PS Beta, but when attempting to then open the file in Camera Raw the notice "The ICC color profile of this document is not compatible with the Camera Raw filter. Convert the document to another profile to apply the Camera Raw filter." This happens with files from either the Nikon Z6-II and Z9.
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Hi @hammer1975able5C1A could you share your workflow and when you see this, it is a bit unclear when in your workflow you are getting this message. Do you have the latest Ps beta: Adobe Photoshop Version: 25.13.0 20240911.m.2768 2674484 arm64 ?
Try resetting Prefs for the Beta:
/Users/yourname/Library/Preferences/ Photoshop Beta Settings (Mac Ventura)
/Users/yourname/Library/Preferences/Adobe\ Photoshop\ \(Beta\)\ Settings (Mac)

C:\Users\user name\AppData\Roaming\Adobe\Adobe Photoshop (Beta)\Adobe Photoshop (Beta) Settings
Launch BETA Photoshop While Pressing The Keyboard Shortcut
With Photoshop closed, press and hold Shift+Ctrl+Alt (Win) / Shift+Command+Option (Mac) on your keyboard and then Launch Photoshop the way you normally would.
https://helpx.adobe.com/photoshop/using/preferences.html#Manually 
You also may have a corrupt color profile, but let's start here.
Thanks,
Cory - Photoshop Product Manager