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I'm using photoshop layer comps for texturing.
I have in my document layers, which used color overlay style, in some layer comps, and have not assigned style in other
When i've adjust layer comps, they are switching correctly, till save/load.
After reopening document, layers in layer comp, in which has not assigned styles, get style from previous layercomp in order.
Till save/open i'm not used some automation like scripts etc.
You could check these two places:
1. When you double-click on the Layer Comp, does it show Appearance (Layer Style) is selected?
2. After adjusting your Layer Comp, have you clicked on the icon that looks like two curved arrows? If you hover over it, the tooltip shows that it's the Update Layer Comp button.
If other comments don't help, check or inform if these states are even saved.
Several things are not saved in a Layer Comp, like Mask Density (a huge oversight, IMO), and state of Smart Filters, for example.