After creating them, you install motion graphics templates into the application on your computer (or into your CC Library). You then use a motion graphics template by dragging it into your timeline. That applies the motion graphics template to your sequence, potentially including some media added to a bin in the root of your project, and written to disk in the scratch disk location chosen in Project Settings. Once you have applied it, it is just a regular part of your project and you manage it just like you have always managed projects and media.
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