You'll need to find a metadata field which contains info which you can sort to match the shoot order. This might be Creation Date or possibly clip name or file name, since clips will likely have incremental file names.
Right click the column headers in the project panel and choose Metadata Display. Then enable these columns (and any others which might be useful). You can then sort your footage by these columns and use Automate to Sequence button at the bottom right of the project panel.