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Is there a way to synchronise multiple video tracks with multiple audio tracks? As a batch-synchronisation, I mean.
Or should I do it one by one which is quite time-consuming?
Not sure exactly which scenario you're working ... multiple files of the same scene, or of different scenes.
You can do either.
If say you've got a bin with 10 video clips of different parts of an interview, and ten audio clips recorded separately, you can simply select all, right-click create multicam.
PrPro will create 10 separate multicam files each with the appropriate audio linked to the video it goes with. Pretty much like having 10 clips.