Annoying issue on my part; when I export multiple files it exports the same video

This issue has been ongoing since 2022 and continues to occur in the 2025 version of Adobe Media Encoder. I am experiencing the same problem. When I export a bulk-edited video using Adobe Media Encoder v25.3, the files queue up in both the local drive (C: Documents folder) and the drive where I intend to export my files. This is really annoying! You're paying for the software, and yet the bug is still present from 2022 up to this date.

Please refer to the attached screenshot for reference. The highlighted files in the screenshot are the duplicated files. 

I've been having this same issue as well.  For a while I thought I was going crazy.  For work we take a full show and export it in segments (using in and out points) from Premiere to AME. So for example, I am editing a 1 hour TV show. I have to export it in 6 segments (for commercial breaks) so I will set the in and out points for segment 1 and send it to AME and then do the same with segments 2-6 befor batch exporting.  When AME is done exporting the segments are all wrong, some are duplicated (but named differently) and Its not user error because its been happening with every single show since the update.  I have reverted back to v22.4 to see if that fixes it

Sorry that I'm not following your issue. You say you edit in premiere pro and them export via AME?

-how do you export? What are your range settings? Can you share a screen shot of the export settings?

Hi JonThor, Hope this solution have clear issue temporary.

i got this issue when i click 'send to media encoder' and set in and out point during media encoder loading export project.
and i trying set in and out point 'after' media encoder load export project and this issue 'temporary' clear.

This is Just in my case. 
hope you solve this issue as my solution AND adobe have to fix it ASAP.

Same issue on me after update v 22.5 😞