I don't trust Media Encoder
I have stopped using Media Encoder because of audio issues (among other things). Even after I realized the LUT problem -- when you add LUTs or any effects to premiere or AE: if you don't add them to media encoder, they will not show up in ME unless you add them to those folders, too -- I ALSO had audio issues. The worst offenses were CLIENTS saying the sound wasn't right.
For instance, a recent build (recent meaning 2020?) resulted in audio mixes with odd results in ME as opposed to a PREMIERE encode -- audio keyframes and transitions aren't registering. A build directly from Premiere sounds better than a build from ME. I don't know who's in charge of making sure Premiere and Media Encoder want to pork each other like a couple of randy teens, but you better figure out who let themselves go, because this sucks.
