Transform tool doesn't work with multiple photos

Since the last update to Camera Raw 11.4.1, the transform tool  won't work with multiple exposures of the same image selected. I have a Nikon D610. I shoot 3 exposures of the same thing, and when I have all 3 selected in Camera Raw, I choose the transform tool to align them. It used to adjust them all the same. Now it doesn't. All 3 shots are adjusted differently. Anyone else having this issue? I found a work-around, but it's taking too much time and isn't exact. Adobe, fix this, please!