Using Dreamweaver with WordPress and git

I think setting up Dreamweaver with git or WordPress is pretty straightforward. What is confusing me is setting up Dreamweaver with Wordpress and git. For WordPress developers, we generally only create git repos for the theme or the themes folder. When I associate a git repo to my staging (test) and production (remote) server, Dreamweaver is confused because the git folder hiearchy does not show the entire WordPress folder.

Does anyone know how to set DreamWeaver to deal with git only on the themes folder and understand that the root WordPress installation is a few levels above?