Adding Applications (NEWB)

i dont have an application directory in the FMS folder that is my issue, even if i create one and log into my fms it still doesnt show up

This is an incredibly basic question which betrays the fact that you haven't glanced at any documentation. You can find the answers (and more) on your disk in folder
< FMS2 Install Dir>\documentation

You add applications by creating a folder with any desired name (say "TempApp") in the "applications" folder (by default found in < FMS2 Install Dir>\applications )... You would then create a "main.asc" or "TempApp.asc" to serve as the entry point for your app.