Third Party plugins not exporting in media encoder

Hi all, when I export through media encoder my third party effects (such as a keyer and transitions) don't end up in my export (either showing up as offline media or just not at all), but when I export directly from Premiere Pro they are!

This is interrupting my workflow as I need to continually export when editing other projects (obviosuly not possible if exporting from Premiere directly).

Anyone have any ideas? Thanks