Audition messing up when saving

Audition v 24.0

Windows 11

Whenever I click save in Audition, it shifts all my audio around.

I was editing and cutting pieces and putting them together in the Multitrack, and I hit save under the file menu (not save as), and once I had done so, it shifted all my audio pieces around so they started way earlier than the original clip had. This issue did not occur when I clicked save as. 

I expected my work to save, instead it shifted the audio to earlier in the clip, but kept the length of my cut clips.