Problems with output options, Presenter 11

Hello, I'm having some troubles with the all three Presenter'output options.

I'm using Presenter 11, on PowerPoint 2010, Windows 8; I'm starting using Presenter 11 tring with small presentation made of 4 flv video of few seconds each, 4 slides and a quiz of one question taken from a group of three.

The problem is that if I choose an Swf, Html5 or Both output options, only the html5 one works, and not totally correctly because the slides' time depends on what I choose in the settings and not from the time of the associated video.

On the other hand, in the other two options I can't see the slides and the videos at all, I mean, they're there but the presentation starts directly from the quiz, and can't play the video if you skip on a traditional slide.

I was even asking myself if it's normal that I have an mp4 copy of each video in the final Data folder, even if it's a Swf scorm.

One more thing, does exist a guide to convert correctly flv files in mp4 with Adobe Encoder as in the html5 version happened that some videos where not well synchronized in audio and video?

I tried to verify these scorms on local and on the lms platform, and as I'm used to use Adobe Presenter 7 I worked as I always done with it doing the same kind of settings.

Thank you.