Shapes are a Color, but swatches show "None"

I have a client's logo, (not designed by me) that we are changing a little. HOWEVER the shapes I can SEE in color have no color in the swatches OR in the layers. 
As you can see below (first image), I've selected the light turquoise shape. But in color swatches (and in layers) it has no color. This is true of anything in color. 

If I select the black outline (second image) it reads as black, as it should. If I delete it (third image) It takes the black shape and also the dark turquoise shape. 

I don't see any masks or compound paths. This is making me wild.

I just want to be able to select the "colored" shapes. We want to change his mask a little and maybe change the colors for a specific event.

Thanks for any insight or advise.