If I understand what you are trying to do, it is a workflow in which you create a presentation in InDesign, export PDF from InDesign, and then try to export PDF to PowerPoint (.PPT or .PPTX) from Acrobat. Is this correct?
The most important thing here to understand it that you are dealing with three distinct imaging models. InDesign's imaging model is a subset of everything available in PDF and that the PDF generated from an InDesign document doesn't lose anything from the graphical richness of your InDesign document.
HOWEVER, Microsoft's imaging model used in PowerPoint as well as Word, Excel, and Punisher is a small subset of InDesign's imaging model not to mention the PDF imaging model.
Some examples:
- Drop shadows in InDesign and Illustrator are implemented via PDF transparency's multiply transparency blending mode (one of 16 available transparency blending modes available in both PDF and in InDesign and Illustrator) although Microsoft's imaging model has only on transparency blending mode which corresponds to Adobe's normal transparency blending mode. The visual results are potentially very different.
- InDesign type layout allows for tracking kerning, automatic pair kerning, and various line spacing and justification capabilities that simply don't exist in Office formats.
- Font identification and naming with Microsoft is very different than that used by Adobe. Typically, at least for the Windows version of Office applications, font families consist of regular, italic, bold, and bold italic members. Hacks must be used to represent light, semibold, and black styles, much less condensed, semicondensed, and extended width styles.
- The world of Office is strictly non-color managed RGB. InDesign is always color-managed with support of CMYK and Lab color spaces.
And I could go on-and-on. What you are trying to do is not simple. At best you will achieve a PowerPoint file that you will have to do significant manual adjustment of, unless all you want to do is produce PowerPoint slides that are each one big honk'in raster image representing each page! 
Can we assume you are using this workflow because the final users of your content are doing further edits and don't want to or aren't capable of using InDesign? That would be the only justification for going through all this pain. Otherwise, you might be stuck having to produce content in PowerPoint.
Otherwise, my advise is to use InDesign itself to create your presentations. Export PDF (preferably PDF/X-4) and present using that resultant PDF file for the presentation. FWIW, I've personally been doing that at Adobe since InDesign 1.0. Haven't had one issue with this at all. And my audience certain hasn't missed any cheesy “transitions.” Plus, the graphics are to die for and the presentations can be readily printed at full fidelity.
- Dov