DITA TOC error's, omissions of topics and pathing problems?

[Lewis5FED]

Hi all, 

I've recently been prepping Framemaker for a move over to DITA and HTML5 at my company. 

I've recently experienced the following issue when outputting HTML5 using a Ditamap. 

Basically, when I generate the output, the HTML5 table of contents removes topics from the Ditamap. 

Some background, i've recently installed JRE to fix a previous error, I wonder if this has anything to do with it? 

In addition it also displays the following error " :c It may have been moved, edited, or deleted"... and then my output displays some Arabic text near the header. 

I dont know if this is related or not, but I'm a little bit confused. 

Please see the attached examples. 

One of the DITA Map and another of the output.

[Lewis5FED]

Ammendment: 

When I say "Removes topics from the Ditamap" I mean it doesn't include all the topics from the Ditamap in the output**

[pulkitn]

Hi @Lewis5FED,

I can understand your issue  and have few points 

• Do you think this is Toc linking issue or a particular topic is not generated?
• Further, FM post-process the standard DITA-OT output, Just to bottom down the cause of issue, I want you to try generating DITA -OT output by going to Structure-->DITA--> Generate DITA-OT output.
  
  

Thanks
Pulkit Nagpal

FM &FMS Engg.