Perspective Warp on multiple layers & stop pop up help windows

Hard to explain but will try.

Lets say a retouching project starts out with 3 backgrounds living rooms shots, where the focus is set at different distances, and they like certain areas of each photo. You use load files into stack and end up with 3 layers.

You add a TV above fireplace, a person in front of fireplace and some light rays from a window, shadow from a plant, and a dust removal; layer, so +5 more layers.

They then ask you to extend the brick ledge above fireplace, remove a vase recenter tv, change the perspective some.

They then want the bevels on tv to be enhanced.

Next they want you to remove the opening to the hallways and fill with a wall.

Now imagine if someone creates smart objects somewhere along the way, nest them inside another smart object,  and now all you have to do is make the TV larger. But the dust removal layer for the tv is part of a dust removal layer on top of all and you have to dig inside of nested smart objects, and hope you don't miss a layers that might for example enhance they fine edges on the logo of the tv.

For me is similar to folder structure on a server and going to many folders deep or do an illogical organization becomes difficult to work with.

Hope that makes sense.

Danke Herr Pfaffenbichler. Your suggestion is excellent, at first I tired this and was disappointed that all pop ups still come up.

Then I did exactly as you suggested, and the first half of pop ups stopped on Mac High Sierra CC2019.

Thought I remebered tool tips being under general, so thank you for showing me with where that settings resides.

For the main question I would do a smart object if I worked for myself. Working with others I want to limit them from making the images impossible to edit later without flattening.