Continuously Rasterize hiding layers

A rick said we need more information about your issue and your layer property and the effects you use 

We would have a lot better idea about what is going on in your composition if you took a real screenshot (incredibly easy on Windows and Mac) and the screenshot showed the modified properties of the layers that are giving you problems. Your selected layer has effects applied, it may be move, scaled, or even be pre-composed. Start by selecting the problem layer, press the "u" key twice, then start turning things off or resetting them. If you have a camera in the scene and the problem layer is a nested comp (pre-comp) and there are 3D layers in the nested comp, collapsing transformations will take the position information from the layer in the pre-comp and not from the nested comp's position property, even if that layer is 3D.

Give us some idea of what is going on in the comp and what your workflow is and we can probably help you figure out where the layers are going. All you have to do is copy and paste or drag your screenshot to the reply field and let us see what is going on with the problem layers.