If you set the composition to have an even number of pixels, the problem disappears. Something funky going on with an odd number of pixels in the composition.
Thanks for posting here to the forums, and sorry this issue has caused issues for your deadline.
I took a look at your project and can reproduce this in the current build after updating your project to 25.0. Likely has to do with 0 of the pixels of the Stencil Alpha mode layer overlapping the visible composition. While I was initially able to see the difference at 50% and 100%, I can no longer reproduce it.
I've opened a bug internally for this to be looked at, both in concern for inconsistency across zoom levels as well as what the correct behavior for a non overlapping stencil alpha layer should be.
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