Hyperlinking Ease - INDD or Acrobat???

I am working on a 500+ page report that spans several indd documents. The final output will be compiled into a single pdf. Throughout the entire report there are hundreds of references to tables, figures and appendices that will need to be hyperlinked. (All pages/links will live inside the final pdf).

I'm trying to decide if it will be easier and/or more efficient to created hyperlinks to the indd files as I work or wait until the end and create them inside the compiled PDF. I realize there's so many what ifs and other details to consider when making this decision (I'm imagining late content edits and page shuffling).

Basically, I just want to know if anyone can weigh in on the ease of hyperlinking in INDD vs. Acrobat. Is one CLEARLY faster and more efficient than the other or are they comparable?

Appreciate your thoughts!