Use a script to place in the logo size it and position it for the image's size. Here is] how I do it. It easy to change this script for your use.
/* ==========================================================
// 2017 John J. McAssey (JJMack)
// ======================================================= */
// This script is supplied as is. It is provided as freeware.
// The author accepts no liability for any problems arising from its use.
/*
<javascriptresource>
<about>$$$/JavaScripts/PlaceWatermark/About=JJMack's PlaceWatermark ^r^rCopyright 2017 Mouseprints.net^r^rPhotoshop Script^rCustomize using first four var</about>
<category>JJMack's Script</category>
<enableinfo>true</enableinfo>
</javascriptresource>
*/
#target photoshop;
app.bringToFront();
var logoFile = "~/Desktop/JJMack.png"; // Watermark file should be large for resize down works better than up
var LogoSize = 10; // percent of document height to resize Watermark to
var LogoMargin = 1; // percent of Document height the Watermark should have as a margin
var BottomLetf = false; // false = Bottom Right true Bottom Left
//placeWatermark(logoFile, LogoSize, LogoMargin); // Place Watermark into the bottom of the document
if (documents.length) app.activeDocument.suspendHistory('placeWatermark','placeWatermark(logoFile,LogoSize,LogoMargin)' );
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
function placeWatermark(Image,Size,Margin){
if(!documents.length) return; // if no document return
var fileObj = new File(Image); // the passed file
if(!fileObj.exists){ // If file does not exits tell user
alert(fileObj.name + " does not exist!"); // Alert User
return; // return
}
try{
var doc = app.activeDocument; // set Doc object to active document
app.displayDialogs = DialogModes.NO; // Dialog off
var strtRulerUnits = app.preferences.rulerUnits; // Save Users ruler units
var strtTypeUnits = app.preferences.typeUnits; // Save Users Type units
app.preferences.rulerUnits = Units.PIXELS; // work with pixels
app.preferences.typeUnits = TypeUnits.PIXELS; // work with pixels
var layers = app.activeDocument.layers; // get layers
app.activeDocument.activeLayer = layers[0]; // Target Top Layer
placeFile(fileObj); // Place in file the Watermark png file
activeDocument.activeLayer.resize(100 ,100,AnchorPosition.MIDDLECENTER); // Insure Place did not scale layer
var SB = activeDocument.activeLayer.bounds; // get layers bounds
var layerHeight = SB[3] - SB[1]; // get layers height
var resizePercent = (100/layerHeight)*(Size/100*doc.height.value); // Percent to resize by
activeDocument.activeLayer.resize(resizePercent ,resizePercent,AnchorPosition.MIDDLECENTER); // Resize width and height by percentage
SB = activeDocument.activeLayer.bounds; // get resized layers bounds
activeDocument.activeLayer.translate(-SB[0].value,-SB[1].value); // Move resized layer to top left canvas corner
var LayerWidth = (SB[2].value - SB[0].value); // get resized layers width
var LayerHeight = (SB[3].value - SB[1].value); // get resized layers height
marginSize = Margin/100*doc.height.value; // Margin size
// move resized watermark into the document lower right corner with some margin or lower left
if ( BottomLetf) {activeDocument.activeLayer.translate(marginSize,( doc.height.value -marginSize - LayerHeight));}
else {activeDocument.activeLayer.translate((doc.width.value -marginSize - LayerWidth),( doc.height.value -marginSize - LayerHeight));}
}
catch(e) { alert(e + ': on line ' + e.line); } // inform user of error
finally{
app.preferences.rulerUnits = strtRulerUnits; // Restore user ruler units
app.preferences.typeUnits = strtTypeUnits; // Restore user type units
};
};
////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
function placeFile(placeFile) {
var desc21 = new ActionDescriptor();
desc21.putPath( charIDToTypeID('null'), new File(placeFile) );
desc21.putEnumerated( charIDToTypeID('FTcs'), charIDToTypeID('QCSt'), charIDToTypeID('Qcsa') );
var desc22 = new ActionDescriptor();
desc22.putUnitDouble( charIDToTypeID('Hrzn'), charIDToTypeID('#Pxl'), 0.000000 );
desc22.putUnitDouble( charIDToTypeID('Vrtc'), charIDToTypeID('#Pxl'), 0.000000 );
desc21.putObject( charIDToTypeID('Ofst'), charIDToTypeID('Ofst'), desc22 );
executeAction( charIDToTypeID('Plc '), desc21, DialogModes.NO );
};