Running a JavaScript via Action Produced a Different Result than Running the Script Directly

Here is my javascript, a screenshot, and a pdf(its in the drag and drop here dialogue box, don't see it on my end of the comment though). I have also commented out the save-as-pdf portion of the code for testing.

if ( app.documents.length > 0 ) //make sure we have a file open to work with  
{
        var doc = app.activeDocument;  
        var myFile = new File(doc.fullName.toString().substr(0,doc.fullName.toString().lastIndexOf('.')) + "-SO.pdf");  
        var saveOpts;  

    // Add Layers and Referance Layers
        var artLayer = doc.layers["Art"];
        var panelLayer = doc.layers["Panel"];

        var fontsLayer = app.activeDocument.layers.add();
        fontsLayer.name = "Fonts";

        for (i=0; i < artLayer.textFrames.length; i++)
        {
        artLayer.textFrames[i].duplicate(fontsLayer);
        }
    

    // Outline fonts in art layer
        app.activeDocument.selection = null;
        artLayer.hasSelectedArtwork = true;
        app.executeMenuCommand("outline")
        app.activeDocument.selection = null;
    
    // Add description of item via prompt
        var Desc = app.activeDocument.layers.add();
        Desc.name = "SO-Desc~";
        Desc.zOrder(ZOrderMethod.SENDTOBACK);
        var DescLayer = doc.layers.getByName("SO-Desc~"); 
    
    // Get artboard deminsions
        var ArtB = app.activeDocument.artboards[0].artboardRect;
        var ABtop = ArtB[1];
		var ABleft = ArtB[0];
		var ABwidth = ArtB[2]-ArtB[0];						
        var ABheight = ArtB[1]-ArtB[3];	

    // Set Color for temp obj
        var invColor = new CMYKColor();
        invColor.black = 0;
        invColor.cyan = 0;
        invColor.magenta = 0;
        invColor.yellow = 0;

    // Make Temp obj
        var placeHolder = DescLayer.pathItems.rectangle(ABtop, ABleft, ABwidth, ABheight)
        placeHolder.filled = true;
        placeHolder.stroked = false;
        placeHolder.fillColor = invColor;
        placeHolder.opacity = 0;

    // Input description which is added to layers panel. 
        var descPrompt = prompt ("Input item description to be shown on Sign-Off Proof. For example, ''All-American Properties.com - Right Facing Sign''")
        Desc.name = "SO-Desc~" + descPrompt;
    
    // Deselect all
        app.activeDocument.selection = null;

    // Select objects in layer
        panelLayer.hasSelectedArtwork = true;
        app.executeMenuCommand("noCompoundPath")

    // place items in variable
        var sel = doc.selection; 
        var ocgPrev = app.activeDocument.layers.add();
        ocgPrev.name = "OCG-Preview";
        var ocgLayer = doc.layers["OCG-Preview"];

    // Copy items from panel layer to OCG preview
        for(var y = sel.length-1;y >-1; y--)  
        {      
            var thisItem = sel[y].duplicate(ocgPrev);                
            thisItem.filled = true;
            thisItem.stroked = false;
            thisItem.fillColor = invColor;
            thisItem.opacity = 0;
        }  

        //Deselect objects in layer
        ocgLayer.hasSelectedArtwork = false;
        app.activeDocument.selection = null;

        //Select all Objects in OCG Layer
        ocgLayer.hasSelectedArtwork = true;
        
        //Apply Pathfinder Join to merge all items into one path item
        app.executeMenuCommand("group")
        app.executeMenuCommand("Live Pathfinder Add")
        app.executeMenuCommand("expandStyle")

        //Make that path item invisible
        var selOCG = doc.selection; 
        var thisItemOCG = selOCG[0]
        thisItemOCG.opacity = 0;

        //Lock layers
        Desc.visible = false;
        Desc.locked = true;
        ocgPrev.zOrder(ZOrderMethod.SENDTOBACK);
        ocgPrev.visible = false;
        ocgPrev.locked = true;
        fontsLayer.visible = false;
        fontsLayer.locked = true;

       // setSaveOptions();  
       // saveFileToPDF(myFile);  
}
else
{
    alert("No Document Open")
}  
  
  
function saveFileToPDF(myFile){  
    var originalInteractionLevel = userInteractionLevel;        	//save the current user interaction level  
    userInteractionLevel = UserInteractionLevel.DONTDISPLAYALERTS;      //Set user interaction level to suppress alerts  
    doc.saveAs(myFile,saveOpts);        				//Save File  
    userInteractionLevel = originalInteractionLevel;        		//Set user interaction level back to original settings  
}  
  
  
function setSaveOptions(){  
    //  Setup Save Options  
    saveOpts = new PDFSaveOptions();    
	saveOpts.pDFPreset = "PDF Workflow"; 			//Sign Division Workflow
}