Page numbering in sections is messing up my print booklet page order

Hi there,

I've overrided my master page after creating page numbers to start page 1 on page 6. I did this by creating a section. However, now that I have created a section, it has messed up my booklet print setting as now the page order is out of whack. I've got 20 pages so it should be working as it is a multiple of 4, help!!