There is another way to write a straight RGBA file using ProEXR, now built into AE. Drop your final comp into a new comp and duplicate the layer. For the top layer, apply a Shift Channels with Alpha set to Full On. Keep Red, Green, and Blue as they are. Name this layer RGB. For the bottom layer, apply Shift Channels with Alpha set to Full On. Set Red, Green, and Blue to Alpha. Name this layer A. Write the file using Composition > Save Frame As > ProEXR. In the ProEXR settings, turn off "Include layer composite". Click the Render button. Obviously this method is much more trouble, but it's there.
... View more