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I was rendering a video with remove grain effect, it ends up choppy even with using the H.264 codec. Would love to hear solutions. Here is the Choppy Video
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Standard answer: Start by veryfying your footage interpretation, comp and framerate settings. Also if you use temporal multisampling on the grain removal effect you may need to check how many frames it actually analyzes. Crooked values can have all sorts of weird side effects.
Mylenium
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I went and checked everything you mentioned. They all seem to be good.
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Remove Grain is a God-Awful -slow effect even under the best of circumstances. Give AE the best shot at doing the job properly. Assuming this is mp4/h.264 video, or even worse -video from a phone, I recommend transcoding it. I like Quicktime movies in ProRes 422 for such chores.
And if the transcoded file size makes you gasp, there's an easy solution -- get more storage. It's cheap.