Hi,
I am not surprised. The links are not dynamic, so once the link is established to a local resources, it will remain. Moving files to a different location will automatically break the link. On re-open, you can reconnect the first resource (image, text, spreadsheet...) and if the others are stored in the same location, InDesign will try to reconnect them all.
The link is not editable, so you cannot switch from absolute to relative addresses.
Using CI Hub, you should be able to start your document with everything stored in your CMS.
There are scripts (Solved: InDesign Script to Update Link Path - Adobe Community - 8743657) but I don not know of any extentions/plugins that could help.
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